A couple of blind observations - a photo might help a lot
Sometimes you have to allow the stove to "bloom" before putting a pot on top of it - the water in the pot is acting as a "cold sink" conducting away lots of heat generated which might not be allowing the fuel and the stove to reach optimum efficiency - before it runs out of / or gets low on fuel. This can also be attributable to lighting the stove on a cold floor or during the winter!
Sometimes meths is watered down to reduce the amount of soot build up on the bottom of cooking pots - if this is an old batch and has been watered down once or twice (some of us can't remember whether we did it or not - so add another glug of water for good measure!).
Also check that the diameter of the pot is sufficiently large to allow the flames to actually heat the pot and not just lick up around the sides.
HTH
Ogri the trog